| Title |
Author(s) |
| Finding Genes by Hidden Markov Models with
Protein Motifs |
Kiyoshi Asai,
Yutaka Ueno, Katunobu Itou and Tetsushi Yada |
| The
Relationship of Codon Complementarity to Protein
Structure: New Approaches to Structure Prediction and
Gene Identification. |
Eluemuno R. Blyden |
| Assessment of Exon Quality and
Prediction of Alternative Splicing |
Christopher
Burge |
| Analysis
of Base-Pairing Patterns in Folded mRNAs |
David Digby and William
Seffens |
| Detection of HTH Motifs via Data
Mining |
Yuan Gao,
Mu Yang, Xingqiang Wang, Kalai Mathee and Giri Narasimhan |
| Mutual
Information Reveals Species-Independent Statistical
Differences Between Coding and Non-coding DNA |
Ivo Grosse, Hanspeter Herzel,
Sergey V. Buldyrev and H. Eugene Stanley |
| Finding Sequencing Errors on DNA
Coding Regions Based on Frame Predictions from a
Combination of Statistical and Neural Network Methods. |
Artemis G.
Hatzigeorgiou and Martin Reczko |
| Application
of Motif-Detection Algorithms to the Family of
Trans-Envelope Accessory Proteins in Efflux Pumps of
Gram-Negative Bacteria. |
Jason M. Johnson and George
M. Church |
| GeneGenerator - A Flexible Algorithm
for Exon-Intron Prediction and its Application to Maize |
J.Kleffe,
K.Hermann, W.Vahrson, B.Wittig and V.Brendel |
| GeneToolsTM
- A Report Building and Analysis Engine for Gene
Discovery. |
Martin Leach |
| An Automatic Graded Partitioning of
all Proteins |
Michal
Linial, Nathan Linial, Naftali Tishby and Golan Yona |
| Development
of a Novel Error Analytical Approach to EST Consensus
Building. Towards a More Comprehensive Conceptual
Consensus of the Expressed Human Genome |
Robert Miller, John Burke,
Alan Christoffels and Winston Hide |
| Identifying Gene Function and
Features through Comprehensive Automated Analysis |
Michael M.
Mueller |
| Predicting
Protein Secretion in an Archaeal Genome: The Signal
Peptides of Methanococcus jannaschii |
Henrik Nielsen, Soren Brunak
and Gunnar von Heijne |
| Multiparameter Sensitivity Analysis
for Sequence Comparison |
Byron Olson
and David Fernandez-Baca |
| A
Computational Analysis of the Effect of G Triplets on
Splice Site Selection |
Lior Pachter, John Dunagan,
Daniel J. Kleitman and Bonnie Berger |
| Characterization and Prediction of
Eukaryotic Start Codons. |
Anders Gorm
Pedersen, Henrik Nielsen and Soren Brunak |
| Inteins
and Autocatalytic Protein Splicing and Cleavage -
Identifying Function and Structure from Conserved Protein
Motifs |
Shmuel Pietrokovski |
| Towards a Biologically Relevant
Annotation of the Arabidopsis Genome: Finding the
Location & Structure of Genes. |
Pierre
Rouze, Catherine Mathe, Niels Tolstrup and Soren Brunak |
| Homology
Modeling of a RNP Domain from a Human RNA-binding Protein
Homologous to the D. melanogaster Couch Potato
Protein |
Parag V. Sahasrabudhe,
Roberto Tejero, Yasuhiro Furuichi and Gaetano T.
Montelione |
| Coding Sequences Avoid the Use of
"A" in Degenerate Codon Positions |
William
Seffens |
| Identification
of Remote Homologues of the Beta-Lactamase/DD-Peptidase
Fold. |
Lorenzo Segovia |
| A Scale Space Approach for
Biological Sequence Comparison |
Gautam B.
Singh |
| Algorithms
and Software for Support of Gene Identification
Experiments |
Sing-Hoi Sze, Michael A.
Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana
V. Astakhova and Pavel A. Pevzner |
| A Structure-Based Statistic for
Identifying Coding Regions in mRNAs |
Jack E.
Tabaska and Michael Q. Zhang |
| Exploration
of a Finite Mixture Model of Protein Sequence for
Discriminating Coding from Non Coding Regions in Genomic
DNA |
Edward C. Thayer, Chris
Bystroff, and David Baker |
| A Viable Fourier Measure for Gene
Identification |
S Tiwari, S
Ramachandran, S Bhattacharya, A Bhattacharya and R
Ramaswamy |
| Evolutionary
Divergence of Scorpion Toxins: Nature and Mechanism of
Action: A Computational Analysis |
R. K. Upadhyay and R. N. K.
Bamezai |
| Effect of A+T% on Codon Usage and
Amino Acid Selection in Poxvirus Genes. |
Chris Upton |
| Computational
Geometry of Protein Structure |
Iosif I. Vaisman, Alexander
Tropsha, and Weifan Zheng |
| Identification of Gene from Protein
Sequences Using a Neural Network |
Gilbert F.
White and William Seffens. |
| Genome
Sequencing and Analysis of Schizosaccharomyces pombe |
Valerie Wood |
| Toward the Integration of Gene
Identification and Its Functional Prediction in Microbial
Genomes |
Tetsushi
Yada, Yasushi Totoki, Reiko Tanaka, Takahiro Ishi, and
Kenta Nakai |
| Searching DNA databases for
similarities to DNA sequences: when is a match
significant? |
Isobel Anderson and Andy Brass |