GeneMarkS

John Besemer, Alexandre Lomsadze and Mark Borodovsky
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
Nucleic Acids Research (2001) 29, pp 2607-2618

This webpage provides accesses to version 4.28 of gene prediction program GeneMarkS. This version combines the original 2001 prokaryotic GeneMarkS with later development, which extended the unsupervised gene prediction to intron-less eukaryotes, eukaryotic viruses, phages and EST/cDNA sequences.
   Browse GeneMarkS manual
   Input sequence
Enter sequence (FASTA or multi FASTA format)
or, upload file:
   Action
 
   Options
Sequence type Output format
for gene prediction 		Output options Optional: results
by E-mail
Prokaryotic
Intronless eukaryotic
Virus
Phage
EST/cDNA
LST
GFF
Protein sequence
Gene nucleotide sequence

   Coding potential graph
   (not for multi FASTA)
PDF
PostScript
E-mail

Subject

Compress files
   Advanced options
genetic code 11
"TGA" codon as a Tryptophan (not as a stop codon), genetic code 4
"TGA" codon as a Glycine (not as a stop codon), genetic code 25
Switch off search for gene start related motif(s)
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