GeneMark.hmm prokaryotic

Prokaryotic GeneMark.hmm version 1 Alexander Lukashin and Mark Borodovsky GeneMark.hmm: new solutions for gene finding. Nucleic Acids Research (1998) 26, pp 1107-1115 Prokaryotic GeneMark.hmm version 2 John Besemer, Alexandre Lomsadze and Mark Borodovsky GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Research (2001) 29, pp 2607-2618

This webpage provides access to gene prediction program GeneMark.hmm prokaryotic (version 3.25) and to the sets of pre-computed species specific algorithm parameters (model parameters). The list of currently supported species is available here . These parameter sets were derived by application of the GeneMarkS that carried out unsupervised training on each genome.

Browse GeneMark.hmm prokaryotic manual

Input sequence and Select species

Enter sequence (FASTA or multi FASTA format) or, upload file: Select species Acaryochloris_marina_MBIC11017 Acetobacter_pasteurianus_IFO_3283_01 Acetohalobium_arabaticum_DSM_5501 Acholeplasma_laidlawii_PG_8A Achromobacter_xylosoxidans_A8 Acidaminococcus_fermentans_DSM_20731 Acidaminococcus_intestini_RyC_MR95 Acidianus_hospitalis_W1 Acidilobus_saccharovorans_345_15 Acidimicrobium_ferrooxidans_DSM_10331 Acidiphilium_cryptum_JF_5 Acidiphilium_multivorum_AIU301 Acidithiobacillus_caldus_SM_1 Acidithiobacillus_ferrivorans_SS3 Acidithiobacillus_ferrooxidans_ATCC_23270 Acidithiobacillus_ferrooxidans_ATCC_53993 Acidobacterium_MP5ACTX9 Acidobacterium_capsulatum_ATCC_51196 Acidothermus_cellulolyticus_11B Acidovorax_JS42 Acidovorax_avenae_ATCC_19860 Acidovorax_citrulli_AAC00_1 Acidovorax_ebreus_TPSY Aciduliprofundum_boonei_T469 Acinetobacter_ADP1 Acinetobacter_DR1 Acinetobacter_baumannii_AB0057 Acinetobacter_baumannii_AB307_0294 Acinetobacter_baumannii_ACICU Acinetobacter_baumannii_ATCC_17978 Acinetobacter_baumannii_AYE Acinetobacter_baumannii_SDF Acinetobacter_calcoaceticus_PHEA_2 Actinobacillus_pleuropneumoniae_serovar_3_JL03 Actinobacillus_pleuropneumoniae_serovar_5b_L20 Actinobacillus_pleuropneumoniae_serovar_7_AP76 Actinobacillus_succinogenes_130Z Actinosynnema_mirum_DSM_43827 Aerococcus_urinae_ACS_120_V_Col10a Aeromonas_hydrophila_ATCC_7966 Aeromonas_salmonicida_A449 Aeromonas_veronii_B565 Aeropyrum_pernix_K1 Aggregatibacter_actinomycetemcomitans_ANH9381 Aggregatibacter_actinomycetemcomitans_D11S_1 Aggregatibacter_aphrophilus_NJ8700 Agrobacterium_H13_3 Agrobacterium_radiobacter_K84 Agrobacterium_tumefaciens_C58 Agrobacterium_vitis_S4 Akkermansia_muciniphila_ATCC_BAA_835 Alcanivorax_borkumensis_SK2 Alicycliphilus_denitrificans_BC Alicycliphilus_denitrificans_K601 Alicyclobacillus_acidocaldarius_DSM_446 Aliivibrio_salmonicida_LFI1238 Alkalilimnicola_ehrlichii_MLHE_1 Alkaliphilus_metalliredigens_QYMF Alkaliphilus_oremlandii_OhILAs Allochromatium_vinosum_DSM_180 Alteromonas_SN2 Alteromonas_macleodii__Deep_ecotype_ Aminobacterium_colombiense_DSM_12261 Ammonifex_degensii_KC4 Amycolatopsis_mediterranei_U32 Amycolicicoccus_subflavus_DQS3_9A1 Anabaena_variabilis_ATCC_29413 Anaerococcus_prevotii_DSM_20548 Anaerolinea_thermophila_UNI_1 Anaeromyxobacter_Fw109_5 Anaeromyxobacter_K Anaeromyxobacter_dehalogenans_2CP_1 Anaeromyxobacter_dehalogenans_2CP_C Anaplasma_centrale_Israel Anaplasma_marginale_Florida Anaplasma_marginale_Maries Anaplasma_phagocytophilum_HZ Anoxybacillus_flavithermus_WK1 Aquifex_aeolicus_VF5 Arcanobacterium_haemolyticum_DSM_20595 Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus_profundus_DSM_5631 Archaeoglobus_veneficus_SNP6 Arcobacter_butzleri_RM4018 Arcobacter_nitrofigilis_DSM_7299 Aromatoleum_aromaticum_EbN1 Arthrobacter_FB24 Arthrobacter_arilaitensis_Re117 Arthrobacter_aurescens_TC1 Arthrobacter_chlorophenolicus_A6 Arthrobacter_phenanthrenivorans_Sphe3 Arthrobacter_sp__ATCC_21022 Aster_yellows_witches_broom_phytoplasma_AYWB Asticcacaulis_excentricus_CB_48 Atopobium_parvulum_DSM_20469 Azoarcus_BH72 Azorhizobium_caulinodans_ORS_571 Azospirillum_B510 Azospirillum_lipoferum_4B Azotobacter_vinelandii_DJ Bacillus_amyloliquefaciens Bacillus_amyloliquefaciens_DSM_7 Bacillus_amyloliquefaciens_FZB42 Bacillus_anthracis_A0248 Bacillus_anthracis_Ames Bacillus_anthracis_CDC_684 Bacillus_anthracis_Sterne Bacillus_anthracis__Ames_Ancestor_ Bacillus_atrophaeus_1942 Bacillus_cellulosilyticus_DSM_2522 Bacillus_cereus_03BB102 Bacillus_cereus_AH187 Bacillus_cereus_AH820 Bacillus_cereus_ATCC_10987 Bacillus_cereus_ATCC_14579 Bacillus_cereus_B4264 Bacillus_cereus_E33L Bacillus_cereus_F837_76 Bacillus_cereus_G9842 Bacillus_cereus_NC7401 Bacillus_cereus_Q1 Bacillus_cereus_biovar_anthracis_CI Bacillus_clausii_KSM_K16 Bacillus_coagulans_2_6 Bacillus_coagulans_36D1 Bacillus_cytotoxicus_NVH_391_98 Bacillus_halodurans_C_125 Bacillus_licheniformis_ATCC_14580 Bacillus_megaterium_DSM319 Bacillus_megaterium_QM_B1551 Bacillus_pseudofirmus_OF4 Bacillus_pumilus_SAFR_032 Bacillus_selenitireducens_MLS10 Bacillus_subtilis_168 Bacillus_subtilis_BSn5 Bacillus_subtilis_spizizenii_TU_B_10 Bacillus_subtilis_spizizenii_W23 Bacillus_thuringiensis_Al_Hakam Bacillus_thuringiensis_BMB171 Bacillus_thuringiensis_serovar_konkukian_97_27 Bacillus_weihenstephanensis_KBAB4 Bacteriovorax_marinus_SJ Bacteroides_fragilis_638R Bacteroides_fragilis_NCTC_9343 Bacteroides_fragilis_YCH46 Bacteroides_helcogenes_P_36_108 Bacteroides_salanitronis_DSM_18170 Bacteroides_thetaiotaomicron_VPI_5482 Bacteroides_vulgatus_ATCC_8482 Bartonella_bacilliformis_KC583 Bartonella_clarridgeiae_73 Bartonella_grahamii_as4aup Bartonella_henselae_Houston_1 Bartonella_quintana_Toulouse Bartonella_tribocorum_CIP_105476 Baumannia_cicadellinicola_Hc__Homalodisca_coagulata_ Bdellovibrio_bacteriovorus_HD100 Beijerinckia_indica_ATCC_9039 Beutenbergia_cavernae_DSM_12333 Bifidobacterium_adolescentis_ATCC_15703 Bifidobacterium_animalis_lactis_AD011 Bifidobacterium_animalis_lactis_Bl_04 Bifidobacterium_animalis_lactis_DSM_10140 Bifidobacterium_bifidum_PRL2010 Bifidobacterium_bifidum_S17 Bifidobacterium_dentium_Bd1 Bifidobacterium_longum_BBMN68 Bifidobacterium_longum_DJO10A Bifidobacterium_longum_JCM_1217 Bifidobacterium_longum_JDM301 Bifidobacterium_longum_NCC2705 Bifidobacterium_longum_infantis_157F Bifidobacterium_longum_infantis_ATCC_15697 Blattabacterium__Blattella_germanica__Bge Blattabacterium__Cryptocercus_punctulatus__Cpu Blattabacterium__Mastotermes_darwiniensis__MADAR Blattabacterium__Periplaneta_americana__BPLAN Bordetella_avium_197N Bordetella_bronchiseptica_RB50 Bordetella_parapertussis_12822 Bordetella_pertussis_Tohama_I Bordetella_petrii_DSM_12804 Borrelia_afzelii_PKo Borrelia_bissettii_DN127 Borrelia_burgdorferi_B31 Borrelia_burgdorferi_ZS7 Borrelia_duttonii_Ly Borrelia_garinii_PBi Borrelia_hermsii_DAH Borrelia_recurrentis_A1 Borrelia_turicatae_91E135 Brachybacterium_faecium_DSM_4810 Brachyspira_hyodysenteriae_WA1 Brachyspira_murdochii_DSM_12563 Brachyspira_pilosicoli_95_1000 Bradyrhizobium_BTAi1 Bradyrhizobium_ORS_278 Bradyrhizobium_japonicum_USDA_110 Brevibacillus_brevis_NBRC_100599 Brevundimonas_subvibrioides_ATCC_15264 Brucella_abortus_A13334 Brucella_abortus_S19 Brucella_abortus_bv__1_9_941 Brucella_canis_ATCC_23365 Brucella_canis_HSK_A52141 Brucella_melitensis_ATCC_23457 Brucella_melitensis_biovar_Abortus_2308 Brucella_melitensis_bv__1_16M Brucella_microti_CCM_4915 Brucella_ovis_ATCC_25840 Brucella_pinnipedialis_B2_94 Brucella_suis_1330 Brucella_suis_ATCC_23445 Brucella_suis_VBI22 Buchnera_aphidicola_5A__Acyrthosiphon_pisum_ Buchnera_aphidicola_APS__Acyrthosiphon_pisum_ Buchnera_aphidicola_Bp__Baizongia_pistaciae_ Buchnera_aphidicola_Cc__Cinara_cedri_ Buchnera_aphidicola_Sg__Schizaphis_graminum_ Buchnera_aphidicola_Tuc7__Acyrthosiphon_pisum_ Buchnera_aphidicola__Cinara_tujafilina_ Burkholderia_383 Burkholderia_CCGE1001 Burkholderia_CCGE1002 Burkholderia_CCGE1003 Burkholderia_ambifaria_AMMD Burkholderia_ambifaria_MC40_6 Burkholderia_cenocepacia_AU_1054 Burkholderia_cenocepacia_HI2424 Burkholderia_cenocepacia_J2315 Burkholderia_cenocepacia_MC0_3 Burkholderia_gladioli_BSR3 Burkholderia_glumae_BGR1 Burkholderia_mallei_ATCC_23344 Burkholderia_mallei_NCTC_10229 Burkholderia_mallei_NCTC_10247 Burkholderia_mallei_SAVP1 Burkholderia_multivorans_ATCC_17616 Burkholderia_phymatum_STM815 Burkholderia_phytofirmans_PsJN Burkholderia_pseudomallei_1106a Burkholderia_pseudomallei_1710b Burkholderia_pseudomallei_668 Burkholderia_pseudomallei_K96243 Burkholderia_pseudomallei_MSHR346 Burkholderia_rhizoxinica_HKI_454 Burkholderia_thailandensis_E264 Burkholderia_vietnamiensis_G4 Burkholderia_xenovorans_LB400 Butyrivibrio_proteoclasticus_B316 Caldicellulosiruptor_bescii_DSM_6725 Caldicellulosiruptor_hydrothermalis_108 Caldicellulosiruptor_kristjanssonii_177R1B Caldicellulosiruptor_kronotskyensis_2002 Caldicellulosiruptor_lactoaceticus_6A Caldicellulosiruptor_obsidiansis_OB47 Caldicellulosiruptor_owensensis_OL Caldicellulosiruptor_saccharolyticus_DSM_8903 Calditerrivibrio_nitroreducens_DSM_19672 Caldivirga_maquilingensis_IC_167 Campylobacter_concisus_13826 Campylobacter_curvus_525_92 Campylobacter_fetus_82_40 Campylobacter_hominis_ATCC_BAA_381 Campylobacter_jejuni_81116 Campylobacter_jejuni_81_176 Campylobacter_jejuni_ICDCCJ07001 Campylobacter_jejuni_NCTC_11168 Campylobacter_jejuni_RM1221 Campylobacter_jejuni_doylei_269_97 Campylobacter_lari_RM2100 Candidatus_Accumulibacter_phosphatis_clade_IIA_UW_1 Candidatus_Amoebophilus_asiaticus_5a2 Candidatus_Arthromitus_SFB_mouse_Japan Candidatus_Arthromitus_SFB_rat_Yit Candidatus_Azobacteroides_pseudotrichonymphae_genomovar__CFP2 Candidatus_Blochmannia_floridanus Candidatus_Blochmannia_pennsylvanicus_BPEN Candidatus_Blochmannia_vafer_BVAF Candidatus_Carsonella_ruddii Candidatus_Chloracidobacterium_thermophilum_B Candidatus_Cloacamonas_acidaminovorans Candidatus_Desulforudis_audaxviator_MP104C Candidatus_Hamiltonella_defensa_5AT__Acyrthosiphon_pisum_ Candidatus_Hodgkinia_cicadicola_Dsem Candidatus_Korarchaeum_cryptofilum_OPF8 Candidatus_Koribacter_versatilis_Ellin345 Candidatus_Liberibacter_asiaticus_psy62 Candidatus_Liberibacter_solanacearum_CLso_ZC1 Candidatus_Midichloria_mitochondrii_IricVA Candidatus_Moranella_endobia_PCIT Candidatus_Nitrospira_defluvii Candidatus_Pelagibacter_IMCC9063 Candidatus_Pelagibacter_ubique_HTCC1062 Candidatus_Phytoplasma_australiense Candidatus_Phytoplasma_mali Candidatus_Protochlamydia_amoebophila_UWE25 Candidatus_Puniceispirillum_marinum_IMCC1322 Candidatus_Riesia_pediculicola_USDA Candidatus_Ruthia_magnifica_Cm__Calyptogena_magnifica_ Candidatus_Solibacter_usitatus_Ellin6076 Candidatus_Sulcia_muelleri_CARI Candidatus_Sulcia_muelleri_DMIN Candidatus_Sulcia_muelleri_GWSS Candidatus_Sulcia_muelleri_SMDSEM Candidatus_Tremblaya_princeps_PCIT Candidatus_Vesicomyosocius_okutanii_HA Candidatus_Zinderia_insecticola_CARI Capnocytophaga_canimorsus_Cc5 Capnocytophaga_ochracea_DSM_7271 Carboxydothermus_hydrogenoformans_Z_2901 Carnobacterium_17_4 Catenulispora_acidiphila_DSM_44928 Caulobacter_K31 Caulobacter_crescentus_CB15 Caulobacter_crescentus_NA1000 Caulobacter_segnis_ATCC_21756 Cellulomonas_fimi_ATCC_484 Cellulomonas_flavigena_DSM_20109 Cellulophaga_algicola_DSM_14237 Cellulophaga_lytica_DSM_7489 Cellvibrio_japonicus_Ueda107 Cenarchaeum_symbiosum_A Chelativorans_BNC1 Chitinophaga_pinensis_DSM_2588 Chlamydia_muridarum_Nigg Chlamydia_trachomatis_434_Bu Chlamydia_trachomatis_A2497 Chlamydia_trachomatis_A_HAR_13 Chlamydia_trachomatis_B_Jali20_OT Chlamydia_trachomatis_B_TZ1A828_OT Chlamydia_trachomatis_D_UW_3_CX Chlamydia_trachomatis_L2b_UCH_1_proctitis Chlamydia_trachomatis_L2c Chlamydophila_abortus_S26_3 Chlamydophila_caviae_GPIC Chlamydophila_felis_Fe_C_56 Chlamydophila_pecorum_E58 Chlamydophila_pneumoniae_AR39 Chlamydophila_pneumoniae_CWL029 Chlamydophila_pneumoniae_J138 Chlamydophila_pneumoniae_TW_183 Chlamydophila_psittaci_6BC Chlorobaculum_parvum_NCIB_8327 Chlorobium_chlorochromatii_CaD3 Chlorobium_limicola_DSM_245 Chlorobium_luteolum_DSM_273 Chlorobium_phaeobacteroides_BS1 Chlorobium_phaeobacteroides_DSM_266 Chlorobium_phaeovibrioides_DSM_265 Chlorobium_tepidum_TLS Chloroflexus_Y_400_fl Chloroflexus_aggregans_DSM_9485 Chloroflexus_aurantiacus_J_10_fl Chloroherpeton_thalassium_ATCC_35110 Chromobacterium_violaceum_ATCC_12472 Chromohalobacter_salexigens_DSM_3043 Citrobacter_koseri_ATCC_BAA_895 Citrobacter_rodentium_ICC168 Clavibacter_michiganensis_NCPPB_382 Clavibacter_michiganensis_sepedonicus Clostridiales_genomosp__BVAB3_UPII9_5 Clostridium_BNL1100 Clostridium_SY8519 Clostridium_acetobutylicum_ATCC_824 Clostridium_acetobutylicum_DSM_1731 Clostridium_beijerinckii_NCIMB_8052 Clostridium_botulinum_A2_Kyoto Clostridium_botulinum_A3_Loch_Maree Clostridium_botulinum_A_ATCC_19397 Clostridium_botulinum_A_ATCC_3502 Clostridium_botulinum_A_Hall Clostridium_botulinum_B1_Okra Clostridium_botulinum_BKT015925 Clostridium_botulinum_B_Eklund_17B Clostridium_botulinum_Ba4_657 Clostridium_botulinum_E3_Alaska_E43 Clostridium_botulinum_F_Langeland Clostridium_cellulolyticum_H10 Clostridium_cellulovorans_743B Clostridium_clariflavum_DSM_19732 Clostridium_difficile_630 Clostridium_difficile_CD196 Clostridium_difficile_R20291 Clostridium_kluyveri_DSM_555 Clostridium_kluyveri_NBRC_12016 Clostridium_lentocellum_DSM_5427 Clostridium_ljungdahlii_DSM_13528 Clostridium_novyi_NT Clostridium_perfringens_13 Clostridium_perfringens_ATCC_13124 Clostridium_perfringens_SM101 Clostridium_phytofermentans_ISDg Clostridium_saccharolyticum_WM1 Clostridium_sticklandii_DSM_519 Clostridium_tetani_E88 Clostridium_thermocellum_ATCC_27405 Collimonas_fungivorans_Ter331 Colwellia_psychrerythraea_34H Comamonas_testosteroni_CNB_2 Conexibacter_woesei_DSM_14684 Coprothermobacter_proteolyticus_DSM_5265 Coraliomargarita_akajimensis_DSM_45221 Coriobacterium_glomerans_PW2 Corynebacterium_aurimucosum_ATCC_700975 Corynebacterium_diphtheriae_241 Corynebacterium_diphtheriae_31A Corynebacterium_diphtheriae_BH8 Corynebacterium_diphtheriae_C7__beta_ Corynebacterium_diphtheriae_CDCE_8392 Corynebacterium_diphtheriae_HC01 Corynebacterium_diphtheriae_HC02 Corynebacterium_diphtheriae_HC03 Corynebacterium_diphtheriae_HC04 Corynebacterium_diphtheriae_INCA_402 Corynebacterium_diphtheriae_NCTC_13129 Corynebacterium_diphtheriae_PW8 Corynebacterium_diphtheriae_VA01 Corynebacterium_efficiens_YS_314 Corynebacterium_glutamicum_ATCC_13032 Corynebacterium_glutamicum_R Corynebacterium_jeikeium_K411 Corynebacterium_kroppenstedtii_DSM_44385 Corynebacterium_pseudotuberculosis_3_99_5 Corynebacterium_pseudotuberculosis_FRC41 Corynebacterium_resistens_DSM_45100 Corynebacterium_ulcerans_BR_AD22 Corynebacterium_urealyticum_DSM_7109 Corynebacterium_variabile_DSM_44702 Coxiella_burnetii_CbuG_Q212 Coxiella_burnetii_CbuK_Q154 Coxiella_burnetii_Dugway_5J108_111 Coxiella_burnetii_RSA_331 Coxiella_burnetii_RSA_493 Croceibacter_atlanticus_HTCC2559 Cronobacter_sakazakii_ATCC_BAA_894 Cronobacter_turicensis_z3032 Cryptobacterium_curtum_DSM_15641 Cupriavidus_metallidurans_CH34 Cupriavidus_necator_N_1 Cupriavidus_taiwanensis_LMG_19424 Cyanothece_ATCC_51142 Cyanothece_PCC_7424 Cyanothece_PCC_7425 Cyanothece_PCC_7822 Cyanothece_PCC_8801 Cyanothece_PCC_8802 Cyclobacterium_marinum_DSM_745 Cytophaga_hutchinsonii_ATCC_33406 Dechloromonas_aromatica_RCB Dechlorosoma_suillum_PS Deferribacter_desulfuricans_SSM1 Dehalococcoides_BAV1 Dehalococcoides_CBDB1 Dehalococcoides_GT Dehalococcoides_VS Dehalococcoides_ethenogenes_195 Dehalogenimonas_lykanthroporepellens_BL_DC_9 Deinococcus_deserti_VCD115 Deinococcus_geothermalis_DSM_11300 Deinococcus_maricopensis_DSM_21211 Deinococcus_proteolyticus_MRP Deinococcus_radiodurans_R1 Delftia_Cs1_4 Delftia_acidovorans_SPH_1 Denitrovibrio_acetiphilus_DSM_12809 Desulfarculus_baarsii_DSM_2075 Desulfatibacillum_alkenivorans_AK_01 Desulfitobacterium_hafniense_DCB_2 Desulfitobacterium_hafniense_Y51 Desulfobacca_acetoxidans_DSM_11109 Desulfobacterium_autotrophicum_HRM2 Desulfobulbus_propionicus_DSM_2032 Desulfococcus_oleovorans_Hxd3 Desulfohalobium_retbaense_DSM_5692 Desulfomicrobium_baculatum_DSM_4028 Desulfosporosinus_orientis_DSM_765 Desulfotalea_psychrophila_LSv54 Desulfotomaculum_acetoxidans_DSM_771 Desulfotomaculum_carboxydivorans_CO_1_SRB Desulfotomaculum_kuznetsovii_DSM_6115 Desulfotomaculum_reducens_MI_1 Desulfotomaculum_ruminis_DSM_2154 Desulfovibrio_aespoeensis_Aspo_2 Desulfovibrio_africanus_Walvis_Bay Desulfovibrio_alaskensis_G20 Desulfovibrio_desulfuricans_ATCC_27774 Desulfovibrio_desulfuricans_ND132 Desulfovibrio_magneticus_RS_1 Desulfovibrio_salexigens_DSM_2638 Desulfovibrio_vulgaris_DP4 Desulfovibrio_vulgaris_Hildenborough Desulfovibrio_vulgaris__Miyazaki_F_ Desulfurispirillum_indicum_S5 Desulfurivibrio_alkaliphilus_AHT2 Desulfurobacterium_thermolithotrophum_DSM_11699 Desulfurococcus_kamchatkensis_1221n Desulfurococcus_mucosus_DSM_2162 Dichelobacter_nodosus_VCS1703A Dickeya_dadantii_3937 Dickeya_dadantii_Ech586 Dickeya_dadantii_Ech703 Dickeya_zeae_Ech1591 Dictyoglomus_thermophilum_H_6_12 Dictyoglomus_turgidum_DSM_6724 Dinoroseobacter_shibae_DFL_12 Dyadobacter_fermentans_DSM_18053 Edwardsiella_ictaluri_93_146 Edwardsiella_tarda_EIB202 Eggerthella_YY7918 Eggerthella_lenta_DSM_2243 Ehrlichia_canis_Jake Ehrlichia_chaffeensis_Arkansas Ehrlichia_ruminantium_Gardel Ehrlichia_ruminantium_Welgevonden Elusimicrobium_minutum_Pei191 Enterobacter_638 Enterobacter_aerogenes_KCTC_2190 Enterobacter_asburiae_LF7a Enterobacter_cloacae_ATCC_13047 Enterobacter_cloacae_EcWSU1 Enterobacter_cloacae_SCF1 Enterococcus_faecalis_V583 Erwinia_amylovora_ATCC_49946 Erwinia_amylovora_CFBP1430 Erwinia_billingiae_Eb661 Erwinia_pyrifoliae_Ep1_96 Erwinia_tasmaniensis_Et1_99 Erysipelothrix_rhusiopathiae_Fujisawa Erythrobacter_litoralis_HTCC2594 Escherichia_coli_536 Escherichia_coli_55989 Escherichia_coli_APEC_O1 Escherichia_coli_ATCC_8739 Escherichia_coli_BW2952 Escherichia_coli_B_REL606 Escherichia_coli_CFT073 Escherichia_coli_E24377A Escherichia_coli_ED1a Escherichia_coli_HS Escherichia_coli_IAI1 Escherichia_coli_IAI39 Escherichia_coli_K_12_substr__DH10B Escherichia_coli_K_12_substr__MG1655 Escherichia_coli_K_12_0 Escherichia_coli_K_12_1 Escherichia_coli_K_12_2 Escherichia_coli_K_12_3 Escherichia_coli_K_12_4 Escherichia_coli_K_12_5 Escherichia_coli_O103_H2_12009 Escherichia_coli_O111_H__11128 Escherichia_coli_O127_H6_E2348_69 Escherichia_coli_O157_H7_EC4115 Escherichia_coli_O157_H7_EDL933 Escherichia_coli_O157_H7_Sakai Escherichia_coli_O157_H7_TW14359 Escherichia_coli_O26_H11_11368 Escherichia_coli_O55_H7_CB9615 Escherichia_coli_S88 Escherichia_coli_SE11 Escherichia_coli_SMS_3_5 Escherichia_coli_UMN026 Escherichia_coli_UTI89 Escherichia_coli__BL21_Gold_DE3_pLysS_AG_ Escherichia_fergusonii_ATCC_35469 Ethanoligenens_harbinense_YUAN_3 Eubacterium_eligens_ATCC_27750 Eubacterium_limosum_KIST612 Eubacterium_rectale_ATCC_33656 Exiguobacterium_AT1b Exiguobacterium_sibiricum_255_15 Ferrimonas_balearica_DSM_9799 Ferroglobus_placidus_DSM_10642 Fervidobacterium_nodosum_Rt17_B1 Fibrobacter_succinogenes_S85 Filifactor_alocis_ATCC_35896 Finegoldia_magna_ATCC_29328 Flavobacteriaceae_bacterium_3519_10 Flavobacteriales_bacterium_HTCC2170 Flavobacterium_branchiophilum_FL_15 Flavobacterium_columnare_ATCC_49512 Flavobacterium_johnsoniae_UW101 Flavobacterium_psychrophilum_JIP02_86 Flexistipes_sinusarabici_DSM_4947 Fluviicola_taffensis_DSM_16823 Francisella_TX077308 Francisella_novicida_U112 Francisella_philomiragia_ATCC_25017 Francisella_tularensis_FSC198 Francisella_tularensis_SCHU_S4 Francisella_tularensis_WY96_3418 Francisella_tularensis_holarctica_FTNF002_00 Francisella_tularensis_holarctica_LVS Francisella_tularensis_holarctica_OSU18 Francisella_tularensis_mediasiatica_FSC147 Frankia_CcI3 Frankia_EAN1pec Frankia_EuI1c Frankia_alni_ACN14a Frankia_symbiont_of_Datisca_glomerata Fusobacterium_nucleatum_ATCC_25586 Gallibacterium_anatis_UMN179 Gallionella_capsiferriformans_ES_2 Gardnerella_vaginalis_409_05 Gardnerella_vaginalis_ATCC_14019 Gemmatimonas_aurantiaca_T_27 Geobacillus_C56_T3 Geobacillus_WCH70 Geobacillus_Y412MC52 Geobacillus_Y412MC61 Geobacillus_Y4_1MC1 Geobacillus_kaustophilus_HTA426 Geobacillus_thermodenitrificans_NG80_2 Geobacillus_thermoglucosidasius_C56_YS93 Geobacillus_thermoleovorans_CCB_US3_UF5 Geobacter_FRC_32 Geobacter_M18 Geobacter_M21 Geobacter_bemidjiensis_Bem Geobacter_lovleyi_SZ Geobacter_metallireducens_GS_15 Geobacter_sulfurreducens_PCA Geobacter_uraniireducens_Rf4 Geodermatophilus_obscurus_DSM_43160 Glaciecola_4H_3_7_YE_5 Glaciecola_nitratireducens_FR1064 Gloeobacter_violaceus_PCC_7421 Gluconacetobacter_diazotrophicus_PAl_5 Gluconacetobacter_xylinus_NBRC_3288 Gluconobacter_oxydans_621H Gordonia_bronchialis_DSM_43247 Gordonia_terrae_ATCC_3612 Gramella_forsetii_KT0803 Granulibacter_bethesdensis_CGDNIH1 Granulicella_mallensis_MP5ACTX8 Haemophilus_ducreyi_35000HP Haemophilus_influenzae_86_028NP Haemophilus_influenzae_F3031 Haemophilus_influenzae_F3047 Haemophilus_influenzae_PittEE Haemophilus_influenzae_PittGG Haemophilus_influenzae_Rd_KW20 Haemophilus_parainfluenzae_T3T1 Haemophilus_parasuis_SH0165 Haemophilus_somnus_129PT Haemophilus_somnus_2336 Hahella_chejuensis_KCTC_2396 Halalkalicoccus_jeotgali_B3 Halanaerobium_hydrogeniformans Haliangium_ochraceum_DSM_14365 Haliscomenobacter_hydrossis_DSM_1100 Haloarcula_hispanica_ATCC_33960 Haloarcula_marismortui_ATCC_43049 Halobacterium_NRC_1 Halobacterium_salinarum_R1 Haloferax_volcanii_DS2 Halogeometricum_borinquense_DSM_11551 Halomicrobium_mukohataei_DSM_12286 Halomonas_elongata_DSM_2581 Halopiger_xanaduensis_SH_6 Haloquadratum_walsbyi_DSM_16790 Halorhabdus_utahensis_DSM_12940 Halorhodospira_halophila_SL1 Halorubrum_lacusprofundi_ATCC_49239 Haloterrigena_turkmenica_DSM_5511 Halothermothrix_orenii_H_168 Halothiobacillus_neapolitanus_c2 Helicobacter_acinonychis_Sheeba Helicobacter_bizzozeronii_CIII_1 Helicobacter_felis_ATCC_49179 Helicobacter_hepaticus_ATCC_51449 Helicobacter_mustelae_12198 Helicobacter_pylori_26695 Helicobacter_pylori_B38 Helicobacter_pylori_B8 Helicobacter_pylori_G27 Helicobacter_pylori_HPAG1 Helicobacter_pylori_J99 Helicobacter_pylori_P12 Helicobacter_pylori_PeCan4 Helicobacter_pylori_SJM180 Helicobacter_pylori_Shi470 Heliobacterium_modesticaldum_Ice1 Herbaspirillum_seropedicae_SmR1 Herminiimonas_arsenicoxydans Herpetosiphon_aurantiacus_DSM_785 Hippea_maritima_DSM_10411 Hirschia_baltica_ATCC_49814 Hydrogenobacter_thermophilus_TK_6 Hydrogenobaculum_Y04AAS1 Hyperthermus_butylicus_DSM_5456 Hyphomicrobium_MC1 Hyphomicrobium_denitrificans_ATCC_51888 Hyphomonas_neptunium_ATCC_15444 Idiomarina_loihiensis_L2TR Ignicoccus_hospitalis_KIN4_I Ignisphaera_aggregans_DSM_17230 Ilyobacter_polytropus_DSM_2926 Intrasporangium_calvum_DSM_43043 Isoptericola_variabilis_225 Isosphaera_pallida_ATCC_43644 Jannaschia_CCS1 Janthinobacterium_Marseille Jonesia_denitrificans_DSM_20603 Kangiella_koreensis_DSM_16069 Ketogulonicigenium_vulgare_Y25 Kineococcus_radiotolerans_SRS30216 Kitasatospora_setae_KM_6054 Klebsiella_oxytoca_KCTC_1686 Klebsiella_pneumoniae_342 Klebsiella_pneumoniae_MGH_78578 Klebsiella_pneumoniae_NTUH_K2044 Klebsiella_variicola_At_22 Kocuria_rhizophila_DC2201 Kosmotoga_olearia_TBF_19_5_1 Kribbella_flavida_DSM_17836 Krokinobacter_4H_3_7_5 Kyrpidia_tusciae_DSM_2912 Kytococcus_sedentarius_DSM_20547 Lacinutrix_5H_3_7_4 Lactobacillus_acidophilus_30SC Lactobacillus_acidophilus_NCFM Lactobacillus_amylovorus_GRL_1112 Lactobacillus_brevis_ATCC_367 Lactobacillus_buchneri_NRRL_B_30929 Lactobacillus_casei_ATCC_334 Lactobacillus_casei_BL23 Lactobacillus_casei_Zhang Lactobacillus_crispatus_ST1 Lactobacillus_delbrueckii_bulgaricus_ATCC_11842 Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA_365 Lactobacillus_delbrueckii_bulgaricus_ND02 Lactobacillus_fermentum_IFO_3956 Lactobacillus_gasseri_ATCC_33323 Lactobacillus_helveticus_DPC_4571 Lactobacillus_johnsonii_FI9785 Lactobacillus_johnsonii_NCC_533 Lactobacillus_kefiranofaciens_ZW3 Lactobacillus_plantarum_JDM1 Lactobacillus_plantarum_ST_III Lactobacillus_plantarum_WCFS1 Lactobacillus_reuteri_DSM_20016 Lactobacillus_reuteri_JCM_1112 Lactobacillus_reuteri_SD2112 Lactobacillus_rhamnosus_GG Lactobacillus_rhamnosus_Lc_705 Lactobacillus_ruminis_ATCC_27782 Lactobacillus_sakei_23K Lactobacillus_salivarius_UCC118 Lactobacillus_sanfranciscensis_TMW_1_1304 Lactococcus_garvieae_ATCC_49156 Lactococcus_lactis_Il1403 Lactococcus_lactis_KF147 Lactococcus_lactis_cremoris_MG1363 Lactococcus_lactis_cremoris_SK11 Laribacter_hongkongensis_HLHK9 Lawsonia_intracellularis_PHE_MN1_00 Leadbetterella_byssophila_DSM_17132 Legionella_longbeachae_NSW150 Legionella_pneumophila_2300_99_Alcoy Legionella_pneumophila_Corby Legionella_pneumophila_Lens Legionella_pneumophila_Paris Legionella_pneumophila_Philadelphia_1 Leifsonia_xyli_CTCB07 Leptospira_biflexa_serovar_Patoc__Patoc_1__Ames_ Leptospira_biflexa_serovar_Patoc__Patoc_1__Paris_ Leptospira_borgpetersenii_serovar_Hardjo_bovis_JB197 Leptospira_borgpetersenii_serovar_Hardjo_bovis_L550 Leptospira_interrogans_serovar_Copenhageni_Fiocruz_L1_130 Leptospira_interrogans_serovar_Lai_56601 Leptothrix_cholodnii_SP_6 Leptotrichia_buccalis_C_1013_b Leuconostoc_C2 Leuconostoc_citreum_KM20 Leuconostoc_gasicomitatum_LMG_18811 Leuconostoc_kimchii_IMSNU_11154 Leuconostoc_mesenteroides_ATCC_8293 Listeria_innocua_Clip11262 Listeria_ivanovii_PAM_55 Listeria_monocytogenes Listeria_monocytogenes_08_5923 Listeria_monocytogenes_Clip80459 Listeria_monocytogenes_EGD_e Listeria_monocytogenes_HCC23 Listeria_monocytogenes_serotype_4b_F2365 Listeria_seeligeri_serovar_1_2b_SLCC3954 Listeria_welshimeri_serovar_6b_SLCC5334 Lysinibacillus_sphaericus_C3_41 Macrococcus_caseolyticus_JCSC5402 Magnetococcus_MC_1 Magnetospirillum_magneticum_AMB_1 Mahella_australiensis_50_1_BON Mannheimia_succiniciproducens_MBEL55E Maricaulis_maris_MCS10 Marinithermus_hydrothermalis_DSM_14884 Marinitoga_piezophila_KA3 Marinobacter_aquaeolei_VT8 Marinomonas_MWYL1 Marinomonas_mediterranea_MMB_1 Marinomonas_posidonica_IVIA_Po_181 Marivirga_tractuosa_DSM_4126 Megasphaera_elsdenii_DSM_20460 Meiothermus_ruber_DSM_1279 Meiothermus_silvanus_DSM_9946 Melissococcus_plutonius_ATCC_35311 Mesoplasma_florum_L1 Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 Mesorhizobium_loti_MAFF303099 Mesorhizobium_opportunistum_WSM2075 Metallosphaera_cuprina_Ar_4 Metallosphaera_sedula_DSM_5348 Methanobacterium_AL_21 Methanobacterium_SWAN_1 Methanobrevibacter_ruminantium_M1 Methanobrevibacter_smithii_ATCC_35061 Methanocaldococcus_FS406_22 Methanocaldococcus_fervens_AG86 Methanocaldococcus_infernus_ME Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus_vulcanius_M7 Methanocella_paludicola_SANAE Methanococcoides_burtonii_DSM_6242 Methanococcus_aeolicus_Nankai_3 Methanococcus_maripaludis_C5 Methanococcus_maripaludis_C6 Methanococcus_maripaludis_C7 Methanococcus_maripaludis_S2 Methanococcus_maripaludis_X1 Methanococcus_vannielii_SB Methanococcus_voltae_A3 Methanocorpusculum_labreanum_Z Methanoculleus_marisnigri_JR1 Methanohalobium_evestigatum_Z_7303 Methanohalophilus_mahii_DSM_5219 Methanoplanus_petrolearius_DSM_11571 Methanopyrus_kandleri_AV19 Methanoregula_boonei_6A8 Methanosaeta_concilii_GP6 Methanosaeta_thermophila_PT Methanosalsum_zhilinae_DSM_4017 Methanosarcina_acetivorans_C2A Methanosarcina_barkeri_Fusaro Methanosarcina_mazei_Go1 Methanosphaera_stadtmanae_DSM_3091 Methanosphaerula_palustris_E1_9c Methanospirillum_hungatei_JF_1 Methanothermobacter_marburgensis_Marburg Methanothermobacter_thermautotrophicus_Delta_H Methanothermococcus_okinawensis_IH1 Methanothermus_fervidus_DSM_2088 Methanotorris_igneus_Kol_5 Methylacidiphilum_infernorum_V4 Methylibium_petroleiphilum_PM1 Methylobacillus_flagellatus_KT Methylobacterium_4_46 Methylobacterium_chloromethanicum_CM4 Methylobacterium_extorquens_AM1 Methylobacterium_extorquens_DM4 Methylobacterium_extorquens_PA1 Methylobacterium_nodulans_ORS_2060 Methylobacterium_populi_BJ001 Methylobacterium_radiotolerans_JCM_2831 Methylocella_silvestris_BL2 Methylococcus_capsulatus_Bath Methylomicrobium_alcaliphilum Methylomonas_methanica_MC09 Methylotenera_301 Methylotenera_mobilis_JLW8 Methylovorus_MP688 Methylovorus_glucosetrophus_SIP3_4 Micavibrio_aeruginosavorus_ARL_13 Microbacterium_foliorum_strain_NRRL_B_24224 Microbacterium_testaceum_StLB037 Micrococcus_luteus_NCTC_2665 Microcystis_aeruginosa_NIES_843 Microlunatus_phosphovorus_NM_1 Micromonospora_L5 Micromonospora_aurantiaca_ATCC_27029 Mobiluncus_curtisii_ATCC_43063 Moorella_thermoacetica_ATCC_39073 Moraxella_catarrhalis_RH4 Muricauda_ruestringensis_DSM_13258 Mycobacterium_JDM601 Mycobacterium_JLS Mycobacterium_KMS Mycobacterium_MCS Mycobacterium_Spyr1 Mycobacterium_abscessus_ATCC_19977 Mycobacterium_africanum_GM041182 Mycobacterium_avium_104 Mycobacterium_avium_paratuberculosis_K_10 Mycobacterium_bovis_AF2122_97 Mycobacterium_bovis_BCG_Pasteur_1173P2 Mycobacterium_bovis_BCG_Tokyo_172 Mycobacterium_canettii Mycobacterium_gilvum_PYR_GCK Mycobacterium_leprae_Br4923 Mycobacterium_leprae_TN Mycobacterium_marinum_M Mycobacterium_rhodesiae_NBB3 Mycobacterium_smegmatis_MC2_155 Mycobacterium_tuberculosis_CDC1551 Mycobacterium_tuberculosis_F11 Mycobacterium_tuberculosis_H37Ra Mycobacterium_tuberculosis_H37Rv Mycobacterium_tuberculosis_KZN_1435 Mycobacterium_tuberculosis_KZN_4207 Mycobacterium_ulcerans_Agy99 Mycobacterium_vanbaalenii_PYR_1 Mycoplasma_agalactiae Mycoplasma_agalactiae_PG2 Mycoplasma_arthritidis_158L3_1 Mycoplasma_bovis_Hubei_1 Mycoplasma_bovis_PG45 Mycoplasma_capricolum_ATCC_27343 Mycoplasma_conjunctivae_HRC_581 Mycoplasma_crocodyli_MP145 Mycoplasma_fermentans_JER Mycoplasma_fermentans_M64 Mycoplasma_gallisepticum_R_low_ Mycoplasma_genitalium_G37 Mycoplasma_haemocanis_Illinois Mycoplasma_haemofelis_Langford_1 Mycoplasma_hominis_ATCC_23114 Mycoplasma_hyopneumoniae_232 Mycoplasma_hyopneumoniae_7448 Mycoplasma_hyopneumoniae_J Mycoplasma_hyorhinis_HUB_1 Mycoplasma_leachii_PG50 Mycoplasma_mobile_163K Mycoplasma_mycoides_SC_PG1 Mycoplasma_mycoides_capri_LC_95010 Mycoplasma_penetrans_HF_2 Mycoplasma_pneumoniae_M129 Mycoplasma_pulmonis_UAB_CTIP Mycoplasma_putrefaciens_KS1 Mycoplasma_suis_Illinois Mycoplasma_suis_KI3806 Mycoplasma_synoviae_53 Myxococcus_fulvus_HW_1 Myxococcus_xanthus_DK_1622 Nakamurella_multipartita_DSM_44233 Nanoarchaeum_equitans_Kin4_M Natranaerobius_thermophilus_JW_NM_WN_LF Natrialba_magadii_ATCC_43099 Natronomonas_pharaonis_DSM_2160 Nautilia_profundicola_AmH Neisseria_gonorrhoeae_FA_1090 Neisseria_gonorrhoeae_NCCP11945 Neisseria_lactamica_020_06 Neisseria_meningitidis_053442 Neisseria_meningitidis_FAM18 Neisseria_meningitidis_MC58 Neisseria_meningitidis_Z2491 Neisseria_meningitidis_alpha14 Neorickettsia_risticii_Illinois Neorickettsia_sennetsu_Miyayama Niastella_koreensis_GR20_10 Nitratifractor_salsuginis_DSM_16511 Nitratiruptor_SB155_2 Nitrobacter_hamburgensis_X14 Nitrobacter_winogradskyi_Nb_255 Nitrosococcus_halophilus_Nc4 Nitrosococcus_oceani_ATCC_19707 Nitrosococcus_watsonii_C_113 Nitrosomonas_AL212 Nitrosomonas_Is79A3 Nitrosomonas_europaea_ATCC_19718 Nitrosomonas_eutropha_C91 Nitrosopumilus_maritimus_SCM1 Nitrosospira_multiformis_ATCC_25196 Nocardia_farcinica_IFM_10152 Nocardioides_JS614 Nocardiopsis_dassonvillei_DSM_43111 Nostoc_PCC_7120 Nostoc_punctiforme_PCC_73102 Novosphingobium_PP1Y Novosphingobium_aromaticivorans_DSM_12444 Oceanimonas_GK1 Oceanithermus_profundus_DSM_14977 Oceanobacillus_iheyensis_HTE831 Ochrobactrum_anthropi_ATCC_49188 Odoribacter_splanchnicus_DSM_20712 Oenococcus_oeni_PSU_1 Oligotropha_carboxidovorans_OM5 Olsenella_uli_DSM_7084 Onion_yellows_phytoplasma_OY_M Opitutus_terrae_PB90_1 Orientia_tsutsugamushi_Boryong Orientia_tsutsugamushi_Ikeda Oscillibacter_valericigenes Owenweeksia_hongkongensis_DSM_17368 Paenibacillus_JDR_2 Paenibacillus_Y412MC10 Paenibacillus_larvae_subsp_ATCC_9545 Paenibacillus_mucilaginosus_KNP414 Paenibacillus_polymyxa_E681 Paenibacillus_polymyxa_SC2 Paenibacillus_terrae_HPL_003 Paludibacter_propionicigenes_WB4 Pantoea_At_9b Pantoea_ananatis_LMG_20103 Pantoea_vagans_C9_1 Parabacteroides_distasonis_ATCC_8503 Parachlamydia_acanthamoebae_UV7 Paracoccus_denitrificans_PD1222 Parvibaculum_lavamentivorans_DS_1 Parvularcula_bermudensis_HTCC2503 Pasteurella_multocida_Pm70 Pectobacterium_atrosepticum_SCRI1043 Pectobacterium_carotovorum_PC1 Pectobacterium_wasabiae_WPP163 Pediococcus_pentosaceus_ATCC_25745 Pedobacter_heparinus_DSM_2366 Pedobacter_saltans_DSM_12145 Pelagibacterium_halotolerans_B2 Pelobacter_carbinolicus_DSM_2380 Pelobacter_propionicus_DSM_2379 Pelodictyon_phaeoclathratiforme_BU_1 Pelotomaculum_thermopropionicum_SI Persephonella_marina_EX_H1 Petrotoga_mobilis_SJ95 Phenylobacterium_zucineum_HLK1 Photobacterium_profundum_SS9 Photorhabdus_asymbiotica_ATCC_43949 Photorhabdus_luminescens_laumondii_TTO1 Picrophilus_torridus_DSM_9790 Pirellula_staleyi_DSM_6068 Planctomyces_brasiliensis_DSM_5305 Planctomyces_limnophilus_DSM_3776 Polaromonas_JS666 Polaromonas_naphthalenivorans_CJ2 Polymorphum_gilvum_SL003B_26A1 Polynucleobacter_necessarius_STIR1 Polynucleobacter_necessarius_asymbioticus_QLW_P1DMWA_1 Porphyromonas_asaccharolytica_DSM_20707 Porphyromonas_gingivalis_ATCC_33277 Porphyromonas_gingivalis_TDC60 Porphyromonas_gingivalis_W83 Prevotella_denticola_F0289 Prevotella_melaninogenica_ATCC_25845 Prevotella_ruminicola_23 Prochlorococcus_marinus_AS9601 Prochlorococcus_marinus_CCMP1375 Prochlorococcus_marinus_MIT_9211 Prochlorococcus_marinus_MIT_9215 Prochlorococcus_marinus_MIT_9301 Prochlorococcus_marinus_MIT_9303 Prochlorococcus_marinus_MIT_9312 Prochlorococcus_marinus_MIT_9313 Prochlorococcus_marinus_MIT_9515 Prochlorococcus_marinus_NATL1A Prochlorococcus_marinus_NATL2A Prochlorococcus_marinus_pastoris_CCMP1986 Propionibacterium_acnes_KPA171202 Propionibacterium_acnes_SK137 Propionibacterium_acnes_TypeIA2_P_acn17 Propionibacterium_acnes_TypeIA2_P_acn31 Propionibacterium_acnes_TypeIA2_P_acn33 Propionibacterium_freudenreichii_shermanii_CIRM_BIA1 Prosthecochloris_aestuarii_DSM_271 Proteus_mirabilis_HI4320 Pseudoalteromonas_SM9913 Pseudoalteromonas_atlantica_T6c Pseudoalteromonas_haloplanktis_TAC125 Pseudogulbenkiania_NH8B Pseudomonas_aeruginosa_LESB58 Pseudomonas_aeruginosa_PA7 Pseudomonas_aeruginosa_PAO1 Pseudomonas_aeruginosa_UCBPP_PA14 Pseudomonas_brassicacearum_NFM421 Pseudomonas_entomophila_L48 Pseudomonas_fluorescens_Pf0_1 Pseudomonas_fluorescens_Pf_5 Pseudomonas_fluorescens_SBW25 Pseudomonas_fulva_12_X Pseudomonas_mendocina_NK_01 Pseudomonas_mendocina_ymp Pseudomonas_putida_F1 Pseudomonas_putida_GB_1 Pseudomonas_putida_KT2440 Pseudomonas_putida_S16 Pseudomonas_putida_W619 Pseudomonas_stutzeri_A1501 Pseudomonas_stutzeri_ATCC_17588___LMG_11199 Pseudomonas_syringae_B728a Pseudomonas_syringae_phaseolicola_1448A Pseudomonas_syringae_tomato_DC3000 Pseudonocardia_dioxanivorans_CB1190 Pseudovibrio_FO_BEG1 Pseudoxanthomonas_spadix_BD_a59 Pseudoxanthomonas_suwonensis_11_1 Psychrobacter_PRwf_1 Psychrobacter_arcticus_273_4 Psychrobacter_cryohalolentis_K5 Psychromonas_ingrahamii_37 Pusillimonas_T7_7 Pyrobaculum_1860 Pyrobaculum_aerophilum_IM2 Pyrobaculum_arsenaticum_DSM_13514 Pyrobaculum_calidifontis_JCM_11548 Pyrobaculum_islandicum_DSM_4184 Pyrococcus_NA2 Pyrococcus_abyssi_GE5 Pyrococcus_furiosus_DSM_3638 Pyrococcus_horikoshii_OT3 Pyrococcus_yayanosii_CH1 Pyrolobus_fumarii_1A Rahnella_Y9602 Ralstonia_eutropha_H16 Ralstonia_eutropha_JMP134 Ralstonia_pickettii_12D Ralstonia_pickettii_12J Ralstonia_solanacearum_CFBP2957 Ralstonia_solanacearum_GMI1000 Ralstonia_solanacearum_PSI07 Ramlibacter_tataouinensis_TTB310 Renibacterium_salmoninarum_ATCC_33209 Rhizobium_NGR234 Rhizobium_etli_CFN_42 Rhizobium_etli_CIAT_652 Rhizobium_leguminosarum_bv__trifolii_WSM1325 Rhizobium_leguminosarum_bv__trifolii_WSM2304 Rhizobium_leguminosarum_bv__viciae_3841 Rhodobacter_capsulatus_SB_1003 Rhodobacter_sphaeroides_2_4_1 Rhodobacter_sphaeroides_ATCC_17025 Rhodobacter_sphaeroides_ATCC_17029 Rhodobacter_sphaeroides_KD131 Rhodococcus_equi_103S Rhodococcus_erythropolis_PR4 Rhodococcus_jostii_RHA1 Rhodococcus_opacus_B4 Rhodoferax_ferrireducens_T118 Rhodomicrobium_vannielii_ATCC_17100 Rhodopirellula_baltica_SH_1 Rhodopseudomonas_palustris_BisA53 Rhodopseudomonas_palustris_BisB18 Rhodopseudomonas_palustris_BisB5 Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas_palustris_DX_1 Rhodopseudomonas_palustris_HaA2 Rhodopseudomonas_palustris_TIE_1 Rhodospirillum_centenum_SW Rhodospirillum_rubrum_ATCC_11170 Rhodothermus_marinus_DSM_4252 Rhodothermus_marinus_SG0_5JP17_172 Rickettsia_africae_ESF_5 Rickettsia_akari_Hartford Rickettsia_bellii_OSU_85_389 Rickettsia_bellii_RML369_C Rickettsia_canadensis_McKiel Rickettsia_conorii_Malish_7 Rickettsia_felis_URRWXCal2 Rickettsia_heilongjiangensis_054 Rickettsia_japonica_YH Rickettsia_massiliae_MTU5 Rickettsia_peacockii_Rustic Rickettsia_prowazekii_Madrid_E Rickettsia_rickettsii_Iowa Rickettsia_rickettsii__Sheila_Smith_ Rickettsia_slovaca_13_B Rickettsia_typhi_Wilmington Riemerella_anatipestifer_DSM_15868 Robiginitalea_biformata_HTCC2501 Roseburia_hominis_A2_183 Roseiflexus_RS_1 Roseiflexus_castenholzii_DSM_13941 Roseobacter_denitrificans_OCh_114 Roseobacter_litoralis_Och_149 Rothia_dentocariosa_ATCC_17931 Rothia_mucilaginosa Rubrobacter_xylanophilus_DSM_9941 Ruegeria_TM1040 Ruegeria_pomeroyi_DSS_3 Ruminococcus_albus_7 Runella_slithyformis_DSM_19594 Saccharomonospora_viridis_DSM_43017 Saccharophagus_degradans_2_40 Saccharopolyspora_erythraea_NRRL_2338 Salinibacter_ruber_DSM_13855 Salinibacter_ruber_M8 Salinispora_arenicola_CNS_205 Salinispora_tropica_CNB_440 Salmonella_bongori_NCTC_12419 Salmonella_enterica_arizonae_serovar_62_z4_z23__RSK2980 Salmonella_enterica_serovar_Agona_SL483 Salmonella_enterica_serovar_Choleraesuis_SC_B67 Salmonella_enterica_serovar_Dublin_CT_02021853 Salmonella_enterica_serovar_Enteritidis_P125109 Salmonella_enterica_serovar_Gallinarum_287_91 Salmonella_enterica_serovar_Heidelberg_SL476 Salmonella_enterica_serovar_Newport_SL254 Salmonella_enterica_serovar_Paratyphi_A_AKU_12601 Salmonella_enterica_serovar_Paratyphi_A_ATCC_9150 Salmonella_enterica_serovar_Paratyphi_B_SPB7 Salmonella_enterica_serovar_Paratyphi_C_RKS4594 Salmonella_enterica_serovar_Schwarzengrund_CVM19633 Salmonella_enterica_serovar_Typhi_CT18 Salmonella_enterica_serovar_Typhi_Ty2 Salmonella_enterica_serovar_Typhimurium_LT2 Sanguibacter_keddieii_DSM_10542 Sebaldella_termitidis_ATCC_33386 Segniliparus_rotundus_DSM_44985 Selenomonas_sputigena_ATCC_35185 Serratia_AS12 Serratia_AS9 Serratia_proteamaculans_568 Serratia_symbiotica__Cinara_cedri_ Shewanella_ANA_3 Shewanella_MR_4 Shewanella_MR_7 Shewanella_W3_18_1 Shewanella_amazonensis_SB2B Shewanella_baltica_OS155 Shewanella_baltica_OS185 Shewanella_baltica_OS195 Shewanella_baltica_OS223 Shewanella_denitrificans_OS217 Shewanella_frigidimarina_NCIMB_400 Shewanella_halifaxensis_HAW_EB4 Shewanella_loihica_PV_4 Shewanella_oneidensis_MR_1 Shewanella_pealeana_ATCC_700345 Shewanella_piezotolerans_WP3 Shewanella_putrefaciens_CN_32 Shewanella_sediminis_HAW_EB3 Shewanella_violacea_DSS12 Shewanella_woodyi_ATCC_51908 Shigella_boydii_CDC_3083_94 Shigella_boydii_Sb227 Shigella_dysenteriae_Sd197 Shigella_flexneri_2a_2457T Shigella_flexneri_2a_301 Shigella_flexneri_5_8401 Shigella_sonnei Shigella_sonnei_Ss046 Sideroxydans_lithotrophicus_ES_1 Simkania_negevensis_Z Sinorhizobium_medicae_WSM419 Sinorhizobium_meliloti_1021 Sinorhizobium_meliloti_AK83 Slackia_heliotrinireducens_DSM_20476 Sodalis_glossinidius__morsitans_ Sorangium_cellulosum__So_ce_56_ Sphaerobacter_thermophilus_DSM_20745 Sphaerochaeta_pleomorpha_Grapes Sphingobacterium_21 Sphingobium_SYK_6 Sphingobium_chlorophenolicum_L_1 Sphingobium_japonicum_UT26S Sphingomonas_wittichii_RW1 Sphingopyxis_alaskensis_RB2256 Spirochaeta_Buddy Spirochaeta_caldaria_DSM_7334 Spirochaeta_coccoides_DSM_17374 Spirochaeta_smaragdinae_DSM_11293 Spirochaeta_thermophila_DSM_6192 Spirosoma_linguale_DSM_74 Stackebrandtia_nassauensis_DSM_44728 Staphylococcus_aureus_COL Staphylococcus_aureus_ED98 Staphylococcus_aureus_JH1 Staphylococcus_aureus_JH9 Staphylococcus_aureus_MRSA252 Staphylococcus_aureus_MSSA476 Staphylococcus_aureus_MW2 Staphylococcus_aureus_Mu3 Staphylococcus_aureus_Mu50 Staphylococcus_aureus_N315 Staphylococcus_aureus_NCTC_8325 Staphylococcus_aureus_Newman Staphylococcus_aureus_RF122 Staphylococcus_aureus_USA300_FPR3757 Staphylococcus_aureus_USA300_TCH1516 Staphylococcus_carnosus_TM300 Staphylococcus_epidermidis_ATCC_12228 Staphylococcus_epidermidis_RP62A Staphylococcus_haemolyticus_JCSC1435 Staphylococcus_lugdunensis_HKU09_01 Staphylococcus_pseudintermedius_HKU10_03 Staphylococcus_saprophyticus_ATCC_15305 Staphylothermus_hellenicus_DSM_12710 Staphylothermus_marinus_F1 Starkeya_novella_DSM_506 Stenotrophomonas_maltophilia_JV3 Stenotrophomonas_maltophilia_K279a Stenotrophomonas_maltophilia_R551_3 Streptobacillus_moniliformis_DSM_12112 Streptococcus_agalactiae_2603V_R Streptococcus_agalactiae_A909 Streptococcus_agalactiae_NEM316 Streptococcus_dysgalactiae_equisimilis_GGS_124 Streptococcus_equi_4047 Streptococcus_equi_zooepidemicus Streptococcus_equi_zooepidemicus_MGCS10565 Streptococcus_gallolyticus_ATCC_BAA_2069 Streptococcus_gallolyticus_UCN34 Streptococcus_gordonii_Challis_substr__CH1 Streptococcus_macedonicus_ACA_DC_198 Streptococcus_mitis_B6 Streptococcus_mutans_NN2025 Streptococcus_mutans_UA159 Streptococcus_oralis_Uo5 Streptococcus_parasanguinis_ATCC_15912 Streptococcus_parauberis_KCTC_11537 Streptococcus_pasteurianus_ATCC_43144 Streptococcus_pneumoniae_670_6B Streptococcus_pneumoniae_70585 Streptococcus_pneumoniae_AP200 Streptococcus_pneumoniae_ATCC_700669 Streptococcus_pneumoniae_CGSP14 Streptococcus_pneumoniae_D39 Streptococcus_pneumoniae_G54 Streptococcus_pneumoniae_Hungary19A_6 Streptococcus_pneumoniae_JJA Streptococcus_pneumoniae_P1031 Streptococcus_pneumoniae_R6 Streptococcus_pneumoniae_TCH8431_19A Streptococcus_pneumoniae_TIGR4 Streptococcus_pneumoniae_Taiwan19F_14 Streptococcus_pseudopneumoniae_IS7493 Streptococcus_pyogenes_M1_GAS Streptococcus_pyogenes_MGAS10270 Streptococcus_pyogenes_MGAS10394 Streptococcus_pyogenes_MGAS10750 Streptococcus_pyogenes_MGAS2096 Streptococcus_pyogenes_MGAS315 Streptococcus_pyogenes_MGAS5005 Streptococcus_pyogenes_MGAS6180 Streptococcus_pyogenes_MGAS8232 Streptococcus_pyogenes_MGAS9429 Streptococcus_pyogenes_Manfredo Streptococcus_pyogenes_NZ131 Streptococcus_pyogenes_SSI_1 Streptococcus_salivarius_CCHSS3 Streptococcus_sanguinis_SK36 Streptococcus_suis_05ZYH33 Streptococcus_suis_98HAH33 Streptococcus_suis_BM407 Streptococcus_suis_P1_7 Streptococcus_suis_SC84 Streptococcus_suis_ST3 Streptococcus_thermophilus_CNRZ1066 Streptococcus_thermophilus_LMD_9 Streptococcus_thermophilus_LMG_18311 Streptococcus_uberis_0140J Streptomyces_SirexAA_E Streptomyces_avermitilis_MA_4680 Streptomyces_bingchenggensis_BCW_1 Streptomyces_cattleya_NRRL_8057 Streptomyces_coelicolor_A3_2_ Streptomyces_flavogriseus_ATCC_33331 Streptomyces_griseus_NBRC_13350 Streptomyces_scabiei_87_22 Streptomyces_violaceusniger_Tu_4113 Streptosporangium_roseum_DSM_43021 Sulfobacillus_acidophilus_TPY Sulfolobus_acidocaldarius_DSM_639 Sulfolobus_islandicus_L_D_8_5 Sulfolobus_islandicus_L_S_2_15 Sulfolobus_islandicus_M_14_25 Sulfolobus_islandicus_M_16_27 Sulfolobus_islandicus_M_16_4 Sulfolobus_islandicus_Y_G_57_14 Sulfolobus_islandicus_Y_N_15_51 Sulfolobus_solfataricus_P2 Sulfolobus_tokodaii_7 Sulfuricurvum_kujiense_DSM_16994 Sulfurihydrogenibium_YO3AOP1 Sulfurihydrogenibium_azorense_Az_Fu1 Sulfurimonas_autotrophica_DSM_16294 Sulfurimonas_denitrificans_DSM_1251 Sulfurospirillum_deleyianum_DSM_6946 Sulfurovum_NBC37_1 Symbiobacterium_thermophilum_IAM_14863 Synechococcus_CC9311 Synechococcus_CC9605 Synechococcus_CC9902 Synechococcus_JA_2_3B_a_2_13_ Synechococcus_JA_3_3Ab Synechococcus_PCC_7002 Synechococcus_RCC307 Synechococcus_WH_7803 Synechococcus_WH_8102 Synechococcus_elongatus_PCC_6301 Synechococcus_elongatus_PCC_7942 Synechocystis_PCC_6803 Syntrophobacter_fumaroxidans_MPOB Syntrophobotulus_glycolicus_DSM_8271 Syntrophomonas_wolfei_Goettingen Syntrophothermus_lipocalidus_DSM_12680 Syntrophus_aciditrophicus_SB Tannerella_forsythia_ATCC_43037 Taylorella_asinigenitalis_MCE3 Taylorella_equigenitalis_MCE9 Tepidanaerobacter_Re1 Teredinibacter_turnerae_T7901 Terriglobus_saanensis_SP1PR4 Tetragenococcus_halophilus Thauera_MZ1T Thermaerobacter_marianensis_DSM_12885 Thermanaerovibrio_acidaminovorans_DSM_6589 Thermincola_potens_JR Thermoanaerobacter_X513 Thermoanaerobacter_X514 Thermoanaerobacter_brockii_finnii_Ako_1 Thermoanaerobacter_italicus_Ab9 Thermoanaerobacter_mathranii_A3 Thermoanaerobacter_pseudethanolicus_ATCC_33223 Thermoanaerobacter_tengcongensis_MB4 Thermoanaerobacter_wiegelii_Rt8_B1 Thermoanaerobacterium_thermosaccharolyticum_DSM_571 Thermoanaerobacterium_xylanolyticum_LX_11 Thermobaculum_terrenum_ATCC_BAA_798 Thermobifida_fusca_YX Thermobispora_bispora_DSM_43833 Thermococcus_4557 Thermococcus_AM4 Thermococcus_barophilus_MP Thermococcus_gammatolerans_EJ3 Thermococcus_kodakarensis_KOD1 Thermococcus_onnurineus_NA1 Thermococcus_sibiricus_MM_739 Thermocrinis_albus_DSM_14484 Thermodesulfatator_indicus_DSM_15286 Thermodesulfobacterium_OPB45 Thermodesulfobium_narugense_DSM_14796 Thermodesulfovibrio_yellowstonii_DSM_11347 Thermofilum_pendens_Hrk_5 Thermomicrobium_roseum_DSM_5159 Thermomonospora_curvata_DSM_43183 Thermoplasma_acidophilum_DSM_1728 Thermoplasma_volcanium_GSS1 Thermoproteus_neutrophilus_V24Sta Thermoproteus_tenax_Kra_1 Thermoproteus_uzoniensis_768_20 Thermosediminibacter_oceani_DSM_16646 Thermosipho_africanus_TCF52B Thermosipho_melanesiensis_BI429 Thermosphaera_aggregans_DSM_11486 Thermosynechococcus_elongatus_BP_1 Thermotoga_RQ2 Thermotoga_lettingae_TMO Thermotoga_maritima_MSB8 Thermotoga_naphthophila_RKU_10 Thermotoga_neapolitana_DSM_4359 Thermotoga_petrophila_RKU_1 Thermotoga_thermarum_DSM_5069 Thermovibrio_ammonificans_HB_1 Thermovirga_lienii_DSM_17291 Thermus_scotoductus_SA_01 Thermus_thermophilus_HB27 Thermus_thermophilus_HB8 Thioalkalimicrobium_cyclicum_ALM1 Thioalkalivibrio_K90mix Thioalkalivibrio_sulfidophilus_HL_EbGr7 Thiobacillus_denitrificans_ATCC_25259 Thiomicrospira_crunogena_XCL_2 Thiomonas_intermedia_K12 Tolumonas_auensis_DSM_9187 Treponema_azotonutricium_ZAS_9 Treponema_brennaborense_DSM_12168 Treponema_denticola_ATCC_35405 Treponema_pallidum_Nichols Treponema_pallidum_SS14 Treponema_paraluiscuniculi_Cuniculi_A Treponema_primitia_ZAS_2 Treponema_succinifaciens_DSM_2489 Trichodesmium_erythraeum_IMS101 Tropheryma_whipplei_TW08_27 Tropheryma_whipplei_Twist Truepera_radiovictrix_DSM_17093 Tsukamurella_paurometabola_DSM_20162 Ureaplasma_parvum_serovar_3_ATCC_27815 Ureaplasma_parvum_serovar_3_ATCC_700970 Ureaplasma_urealyticum_serovar_10_ATCC_33699 Variovorax_paradoxus_EPS Variovorax_paradoxus_S110 Veillonella_parvula_DSM_2008 Verminephrobacter_eiseniae_EF01_2 Verrucosispora_maris_AB_18_032 Vibrio_EJY3 Vibrio_Ex25 Vibrio_anguillarum_775 Vibrio_cholerae_M66_2 Vibrio_cholerae_MJ_1236 Vibrio_cholerae_O1_2010EL_1786 Vibrio_cholerae_O1_biovar_El_Tor_N16961 Vibrio_cholerae_O395 Vibrio_fischeri_ES114 Vibrio_fischeri_MJ11 Vibrio_furnissii_NCTC_11218 Vibrio_harveyi_ATCC_BAA_1116 Vibrio_parahaemolyticus_RIMD_2210633 Vibrio_splendidus_LGP32 Vibrio_vulnificus_CMCP6 Vibrio_vulnificus_MO6_24_O Vibrio_vulnificus_YJ016 Vulcanisaeta_distributa_DSM_14429 Vulcanisaeta_moutnovskia_768_28 Waddlia_chondrophila_WSU_86_1044 Weeksella_virosa_DSM_16922 Weissella_koreensis_KACC_15510 Wigglesworthia_glossinidia_endosymbiont_of_Glossina_brevipalpis Wolbachia_endosymbiont_TRS_of_Brugia_malayi Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel Wolbachia_endosymbiont_of_Drosophila_melanogaster Wolbachia_wRi Wolinella_succinogenes_DSM_1740 Xanthobacter_autotrophicus_Py2 Xanthomonas_albilineans_GPE_PC73 Xanthomonas_axonopodis_citri_306 Xanthomonas_axonopodis_citrumelo_F1 Xanthomonas_campestris_8004 Xanthomonas_campestris_ATCC_33913 Xanthomonas_campestris_B100 Xanthomonas_campestris_vesicatoria_85_10 Xanthomonas_oryzae_KACC10331 Xanthomonas_oryzae_MAFF_311018 Xanthomonas_oryzae_PXO99A Xenorhabdus_bovienii_SS_2004 Xenorhabdus_nematophila_ATCC_19061 Xylanimonas_cellulosilytica_DSM_15894 Xylella_fastidiosa_9a5c Xylella_fastidiosa_M12 Xylella_fastidiosa_M23 Xylella_fastidiosa_Temecula1 Yersinia_enterocolitica_8081 Yersinia_enterocolitica_palearctica_105_5R_r_ Yersinia_pestis_Angola Yersinia_pestis_Antiqua Yersinia_pestis_CO92 Yersinia_pestis_KIM_10 Yersinia_pestis_Nepal516 Yersinia_pestis_Pestoides_F Yersinia_pestis_Z176003 Yersinia_pestis_biovar_Microtus_91001 Yersinia_pseudotuberculosis_IP_31758 Yersinia_pseudotuberculosis_IP_32953 Yersinia_pseudotuberculosis_PB1_ Yersinia_pseudotuberculosis_YPIII Zobellia_galactanivorans Zunongwangia_profunda_SM_A87 Zymomonas_mobilis_NCIMB_11163 Zymomonas_mobilis_ZM4 Zymomonas_mobilis_pomaceae_ATCC_29192

Action

Options

Output format for gene prediction Output options Optional: results by E-mail LST GFF Protein sequence Gene nucleotide sequence    Coding potential graph    (not for multi FASTA) PDF E-mail Subject Compress files

Advanced options

Switch off gene start related motif(s)

Contact Us  |  Home